QMENTA Tools Catalog

Computes a morphology study of a T1 image using the recon-all script from FreeSurfer. Produces a quantitative report of volume and thickness from all regions of the sub-cortex and the Desikan... Read More

FDA cleared dynamic contrast-enhanced MRI (DCE-MRI) analysis with multiple models. Key features: Automated AIF/VIF selection Multiple models T... Read More

FDA cleared delta T1 measurement for tumor analysis. Key features: Delta T1 parametric map calculation DICOM export

FDA cleared DW-MRI parametric analysis with multiple diffusion models including apparent diffusion coefficient (ADC) for 2 or more B-values and intravoxel incoherent motion (IVIM) and distributed d... Read More

FDA cleared dynamic susceptibility contrast-enhanced MRI (DSC-MRI) analysis. Key features: Automated AIF/VIF selection Output parametric maps: ... Read More

Segmentation of hyperintense lesions in white matter from T2-FLAIR imaging using a deep convolutional neural network. The White Matter Hyperintensity Lesion Segmentation workflow automatical... Read More

Popular lesion TOADS algorithm for simultaneous brain structures and multiple sclerosis (MS) lesion segmentation of MS Brains. The brain segmentation is topologically consistent, makes use of both?... Read More

Robust volumetry solution for brain MRIs with T1-MPRage as input data. A large normative database allows individual reference values based on percentiles taking gender, age and intracranial volume ... Read More

Robust solution for lesion segmentation of brain MRIs with T1- and T2-FLAIR as input data. By regional classification specific and unspecific lesions for Multiple Sclerosis can be differentiated. P... Read More

Multi-regional segmentation of gliomas and glioblastomas from contrast-enhanced imaging using deep neural networks. The BTS segments a tumor into necrotic regions, enhancing regions and regions of ... Read More

QMENTA’s fully automated connectome pipeline enhanced with lesion-load capabilities. Specially designed for neurodegenerative diseases. Yields a full dis-connectomic analysis from DTI or HARDI im... Read More

QMENTA’s fully automated connectome pipeline. Yields a full connectomic analysis from DTI or HARDI images and T1 weighted anatomical imaging. The connectome pipeline can use standard diffusion te... Read More

The Q-FiberMapper derives diffusion parameters for specific white matter fascicles in the brain using a combination diffusion-weighted magnetic resonance imaging (dMRI) and anatomical MRI informati... Read More

This tool combines the white-matter fascicle segmentation of the Q-FiberMapper with lesion-load quantification.  Specially designed for neurodegenerative diseases. Key features... Read More

FreeSurfer-based whole brain volumetry with large normative database. All regions of the sub-cortex and the Desikan-Killiany-Tournville cortical atlas with volume and thickness are quantified in th... Read More

Computes a morphology study of a T1 image using the recon-all script from FreeSurfer. Produces a quantitative report of volume and thickness from all regions of the sub-cortex and the Desikan... Read More

This tool, based on resting-state functional connectivity, can give insights on how different regions of the brain are functionally correlated. It can be useful to measure how certain diseases migh... Read More

SIENA quantifies a two-time-point longitudinal analysis of brain change, in particular, the estimation of atrophy (volumetric loss of brain tissue). SIENA has been used in many clin... Read More

Mindboggle’s open-source brain morphometry tool which takes in preprocessed T1-weighted MRI data, and outputs volume, surface, and tabular data containing the label, feature, and ... Read More

Open source whole-brain morphology workflow using ANTs package tools. Includes tissue segmentation, cortical parcellation using DKT-40 or AAL atlas and optional averaged region-based cortical thick... Read More

FIRST is a model-based sub-cortical structure segmentation/volumetry tool. The shape/appearance models used in FIRST are constructed from manually segmented images provided by the Center for ... Read More

Automated segmentation of T2 hyperintense lesions in FLAIR images. Originally developed for the segmentation of MS lesions, it has also been proven to be useful for the segmentation of brain lesion... Read More

Produces tensor-derived maps such as fractional anisotropy and mean diffusivity from diffusion MRI images, as well as maps from additional scalar measures. It also produces tensor and eigenv... Read More

SIENAX quantifies brain tissue volumes in a single timepoint. SIENAX performs brain extraction, tissue segmentation, and obtains tissue volumes normalized for skull size. Key featur... Read More