QMENTA Tools Catalog

FreeSurfer 6.0 + Hippocampal Subfields

Computes a morphology study of a T1 image using the recon-all script from FreeSurfer.
Produces a quantitative report of volume and thickness from all regions of the sub-cortex and the Desikan-Killiany-Tournville cortical atlas.
This pipeline includes skull-stripping, tissue segmentation, atlas-based parcellation, volumetry, and cortical thickness computation.
Final outputs are additionally AC-PC aligned.

The hippocampal stream uses additional high-resolution T2-weighted hippocampal imaging (if included in input data) to improve hippocampal sub-fields segmentation.

Key features:

  • Automated whole-brain volumetry and cortical thickness calculation.
  • Full cortex parcellation according to Desikan-Killiany-Tournville atlas.
  • Sub-cortical volumetry.
  • Optional full-head T2 -or- T2-FLAIR input to improve pial surface estimation.
  • Supports high-resolution improved hippocampal sub-fields segmentation and volumetry (requires additional high-resolution T2 hippocampal image following ADNI protocol).
  • Optional hippocampal sub-fields volumetry based on T1 image if no high-resolution hippocampal image is available.
Category:
Head & spine
Tags:
Alzheimer's disease, Fronto-temporal dementia, Multiple sclerosis, Neurodevelopment, Neuroplasticity, Neuropsychiatric disorders, Parkinson's disease, Progressive supranuclear palsy, Research, Stroke
Purpose:
Computes a morphology study of a T1 image using the recon-all script from FreeSurfer.
Regulatory Clearance:
Research use only
Provider:
QMENTA
Modalities:
T1. Optional: T2 -or- T2-FLAIR, T2 hi-res hippocampal